Package: shrinkr
Type: Package
Title: Modular Bayesian Hierarchical Shrinkage Models
Version: 0.4.5
Date: 2026-06-29
Authors@R: c(
    person(given = c("Jacob", "M."),
           family = "Maronge",
           role = c("aut", "cre"),
           email = "jacob.m.maronge@gsk.com",
           comment = c(ORCID = "0000-0003-3606-0841")),
    person("GlaxoSmithKline Research & Development Limited",
           role = c("cph", "fnd")),
    person("Trustees of", "Columbia University",
           role = "cph",
           comment = "R/stanmodels.R, configure, configure.win"))
Description: Implements a two-stage Bayesian hierarchical modeling
        framework for applying shrinkage to subgroup-specific effects.
        The package separates model fitting (Stage 1) from hierarchical
        shrinkage (Stage 2), enabling modular sensitivity analyses
        without refitting expensive Markov chain Monte Carlo (MCMC)
        chains. Supports flexible prior specifications through the
        'distributional' package, mixture approximations via 'mclust',
        and efficient 'Stan'-based inference.
License: GPL (>= 3)
Encoding: UTF-8
Depends: R (>= 4.1)
Imports: rstan (>= 2.32.7), mclust, posterior, distributional, cli,
        tibble, dplyr, purrr, stats, utils, methods, Rcpp (>= 0.12.0),
        RcppParallel (>= 5.0.1), rstantools (>= 2.5.0)
Suggests: testthat (>= 3.0.0), ggplot2, knitr, rmarkdown, patchwork,
        tidybayes, bayesplot, tidyverse, ggdist, ggridges, brms, tidyr,
        survival, MASS, Matrix, beastt
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.32.7), StanHeaders (>=
        2.32.10)
SystemRequirements: GNU make, C++17 compiler
Roxygen: list(markdown = TRUE)
Biarch: true
URL: https://gsk-biostatistics.github.io/shrinkr/
BugReports: https://github.com/GSK-Biostatistics/shrinkr/issues
VignetteBuilder: knitr
NeedsCompilation: yes
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: make
Repository: https://gsk-biostatistics.r-universe.dev
Date/Publication: 2026-07-06 16:00:33 UTC
RemoteUrl: https://github.com/gsk-biostatistics/shrinkr
RemoteRef: HEAD
RemoteSha: f0c6a08b69cba0edade9e87403217a78348c13e1
Packaged: 2026-07-07 08:30:01 UTC; root
Author: Jacob M. Maronge [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3606-0841>),
  GlaxoSmithKline Research & Development Limited [cph, fnd],
  Trustees of Columbia University [cph] (R/stanmodels.R, configure,
    configure.win)
Maintainer: Jacob M. Maronge <jacob.m.maronge@gsk.com>